Getting data from MGnify

Author
Affiliation

Mahfouz Shehu

EMBL-EBI

Published

April 9, 2025

Objectives

  • Exploring MGnify Studies
  • Exploring MGnify Analyses
  • Metagenomic Assembled Genomes

Instructions

For this tutorial, you will need to start the predefined Jupyter notebook and complete the exercises within it. follow the steps below To start the notebook.

  1. Open this link on your browser: https://sa.ndyroge.rs/mgnify-tutorial/notebooks/index.html?path=tutorial.ipynb
  2. Click on the run menu, then click run all cells
  3. Go through the exercises in the notebook

NOTE: In regards to Task 3.1, please begin from page 61 of the results

NOTE: In regards to Task 3.3, take note of the following

A new marine MAG catalogue was recently published on MGnify. When you get to task 3.3, make use of this MAG linked below: MGYG000445242

If you’re interested in learning more about the new marine MAG catalogue, you can find more information here

Reuse

Apache 2.0